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Bioinformatics: from Algorithms to Applications 2017
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Bioinformatics: from Algorithms to Applications 2017
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Workshop: genomics track
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#1
Registration
#2
Opening Ceremony
#3
From Metagenome Sequencing to Genome Mining for New Antibiotics
#4
Use of high throughput DNA sequencing technologies to develop new approaches to study, diagnose and treat autoimmune diseases
#5
Break
#6
Immunoinformatics: Immunology meets Computing
#7
Genome assembly evaluation with QUAST
#8
SPAdes Toolbox
#9
Lunch
#10
Generation and evaluation of complete genomes from metagenomes
#11
Assembly of metagenomic (series) data with SPAdes instruments
#12
What’s old is new again: assembly and alignment for the long-read era
#13
Some components for assembling large genomes and metagenomes
#14
Algorithmic challenges in de novo transcriptome and metatranscriptome assembly
#15
Break
#16
Dealing with mass of genomic data. From optimized data structures to advanced memory architectures
#17
Analytic combinatorics for bioinformatics: applications to seeding and genome assembly
#18
Concentrate – graphical tool for feature scale genomic data analysis
#19
InFusion: advancing discovery of fusions genes and chimeric transcripts from RNA-sequencing data
#20
Lunch
#21
Studying chromatin 3D structure in eukaryotes
#22
Evolutionary Genomics of Antibiotic Resistance
#23
Intragenic multiplications in diatom protein-coding genes
#24
Advanced visual analysis of genomic variations (SNV, inDel, SV) using open source New Genome Browser (NGB)
#25
Closing Remarks
#26
Linux basics
#27
Break
#28
Sequencing basics, quality control and initial data processing reads
#29
Lunch
#30
Assembling bacterial genomes with SPAdes
#31
Break
#32
Quality assessment of assembled sequences
#33
Break
#34
Personal genomic projects
#35
Gene prediction and functional annotation
#36
Break
#37
Personal genomic projects
#38
Lunch
#39
Assembling metagenomes with metaSPAdes
#40
Quality control of RNA-Seq data
#41
Rep-Seq basics: VDJ classification and repertoire construction
#42
Break
#43
Binning assembled sequences
#44
De novo transcriptome assembly and its evaluation
#45
Diversity analysis of adaptive immune repertoires
#46
Break
#47
Clonal analysis of antibody repertoires and dynamics of adaptive immune response
#48
Functional metagenomic annotation
#49
Gene counting and expression analysis basics
#50
Dinner
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