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Bioinformatics: from Algorithms to Applications 2017
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Bioinformatics: from Algorithms to Applications 2017
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Workshop: genomics track
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Workshop: immunogenomics track
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Immunogenomics track
Workshop: metagenomics track
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Tuesday
, August 1
Graduate School of Management Building, room 309
08:30 •
Registration
09:30 •
Opening Ceremony
10:00 •
From Metagenome Sequencing to Genome Mining for New Antibiotics
11:00 •
Use of high throughput DNA sequencing technologies to develop new approaches to study, diagnose and treat autoimmune diseases
11:30 •
Break
11:50 •
Immunoinformatics: Immunology meets Computing
12:10 •
Genome assembly evaluation with QUAST
12:30 •
SPAdes Toolbox
14:00 •
Generation and evaluation of complete genomes from metagenomes
15:00 •
Assembly of metagenomic (series) data with SPAdes instruments
15:20 •
Simulating microbial communities
15:40 •
Break
16:00 •
Oligo-Designer: rational design for easy gene construction and high protein expression
16:40 •
EDEN: Evolutionary Dynamics within Environments
17:00 •
Antibiotic associated dysbiosis and it correction by the indigenous bacteria
17:30 •
Poster Session
Lunch
13:00 •
Lunch
Pier
18:45 •
Conference Dinner
Wednesday
, August 2
Graduate School of Management Building, room 309
09:00 •
Analysis of Nanopore Sequencing Data
10:00 •
Real-time nanopore sequencing and data analysis: in the field and by the patient
11:00 •
Break
11:20 •
Direct RNA and cDNA sequencing of C. elegans transcripts
11:40 •
Metagenome assembly from synthetic long reads using de Bruijn graphs
12:00 •
Integration of sequencing instruments and bioinformatics to accelerate analysis and interpretation
13:30 •
Genome 10K Project at the Dobzhansky Center in St. Petersburg
14:30 •
Correlation analysis of microbial metacommunity in lake Baikal based on data of high throughput sequencing
14:50 •
Metagenomic exploration of horizontal gene transfer events and phage infections in a South African deep subsurface bacterial population
15:10 •
Break
15:30 •
Machine learning identifies unique taxa differentiating proximal and distal human colonic microbiota
15:50 •
"Mutation grade" bacterial sequences: the Bacillus cereus group as an example
16:10 •
Plasmid Diversity from Denovo Assembly in Salmonella Typhimurium
Lunch
12:20 •
Lunch
SPbU Museum
17:00 •
Museum
Thursday
, August 3
Graduate School of Management Building, room 309
09:00 •
What’s old is new again: assembly and alignment for the long-read era
10:00 •
Some components for assembling large genomes and metagenomes
10:20 •
Algorithmic challenges in de novo transcriptome and metatranscriptome assembly
10:40 •
Break
11:00 •
Dealing with mass of genomic data. From optimized data structures to advanced memory architectures
12:00 •
Analytic combinatorics for bioinformatics: applications to seeding and genome assembly
12:20 •
Concentrate – graphical tool for feature scale genomic data analysis
12:40 •
InFusion: advancing discovery of fusions genes and chimeric transcripts from RNA-sequencing data
14:00 •
Studying chromatin 3D structure in eukaryotes
15:00 •
Evolutionary Genomics of Antibiotic Resistance
15:20 •
Intragenic multiplications in diatom protein-coding genes
15:40 •
Advanced visual analysis of genomic variations (SNV, inDel, SV) using open source New Genome Browser (NGB)
16:20 •
Closing Remarks
Lunch
13:00 •
Lunch
Friday
, August 4
Department of Microbiology, Saint Petersburg State University
10:00 •
Linux basics
11:30 •
Break
11:45 •
Sequencing basics, quality control and initial data processing reads
13:15 •
Lunch
14:00 •
Assembling bacterial genomes with SPAdes
15:30 •
Break
15:45 •
Quality assessment of assembled sequences
17:15 •
Break
17:30 •
Personal genomic projects
Saturday
, August 5
Department of Microbiology, Saint Petersburg State University
10:00 •
Gene prediction and functional annotation
11:30 •
Break
11:45 •
Personal genomic projects
13:15 •
Lunch
14:00 •
Assembling metagenomes with metaSPAdes
14:00 •
Rep-Seq basics: VDJ classification and repertoire construction
14:00 •
Quality control of RNA-Seq data
15:30 •
Break
15:45 •
De novo transcriptome assembly and its evaluation
15:45 •
Diversity analysis of adaptive immune repertoires
15:45 •
Binning assembled sequences
17:15 •
Break
17:30 •
Gene counting and expression analysis basics
17:30 •
Clonal analysis of antibody repertoires and dynamics of adaptive immune response
17:30 •
Functional metagenomic annotation
Pogreeb
19:00 •
Dinner
Timezone
Bioinformatics: from Algorithms to Applications 2017
Europe/Moscow
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Bioinformatics: from Algorithms to Applications 2017
Aug 1
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5, 2017
Tuesday
, August 1
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, August 2
Thursday
, August 3
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, August 4
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, August 5
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Saint Petersburg, Russia
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Department of Microbiology, Saint Petersburg State University
Graduate School of Management Building, room 309
Lunch
Pier
Pogreeb
SPbU Museum
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Dinner
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Workshop: genomics track
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All
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Dates
Tuesday
, August 1
Wednesday
, August 2
Thursday
, August 3
Friday
, August 4
Saturday
, August 5
Venue
Department of Microbiology, Saint Petersburg State University
Graduate School of Management Building, room 309
Lunch
Pier
Pogreeb
SPbU Museum
Session Type
Break
Dinner
Invited Talk
Opening or Closing Talk
Posters
Talk
Workshop: genomics track
All
Genomics track
Workshop: immunogenomics track
All
Immunogenomics track
Workshop: metagenomics track
All
Metagenomics track
Workshop: transcriptomics track
All
Transcriptomics track
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Popular